Run Software

*If this is your first time using eeDAP, we recommend you use the links in this page to go to the Workflow page and view the video manuals(Digital: https://www.youtube.com/watch?v=8fOYwzjwIAc. MicroRT: https://www.youtube.com/watch?v=L81Brta9_3E) for more information on how to run eeDAP .

How to run sample eeDAP input file (sample_input_svs.dapsi):

Download Sample WSI Image

1. Download the WSI from CMU openslide page http://openslide.cs.cmu.edu/download/openslide-testdata/Hamamatsu/CMU-1.ndpi

2. Save it to your computer (directory should be same as wsi_slot_x in input file)
Setting up Hardware

*When opening eeDAP, the appication does not open immediately, may take a few seconds to open.
Load input file

1. From the eeDAP Administrator Input Screen page, click the button "Click to browse for .dapsi input file."

2. Navigate into the folder "sample_inputfiles"

- Select one of the input files according to the given WSI image, camera, stage, and microscope

3. Extract the chosen sample file by clicking "Extract ROIs".

4. Select viewing mode, Digital or MicroRT

5. Click Start button to begin (If MircoRT is chosen, continue to Serial Port cofiguration or MicroRT Registration. If Digitial is chosen, continue to eeDAP study)

In MicroRT mode, user needs to do MicroRT Registration (Both the WSI and corresponding glass slide is needed)

eeDAP Study

1. Input user ID and click Next (Micro RT Model continue to 2, Digital Model bypass to 6)

2. Mircoscope stage will automatically move to last know tissue location and do "Fast Registration"

3. Focus microscope and check registration result, registration may fail due to unfocused tissue (Passed registration bypass to 6)

4. If registration is not valid, click on "Reset". If the registration is valid, skip to 6

5. Then select either "Fast Registration" or "Best Registration" in the control panel

6. Follow the task instructions to complete each given tasks and press next

7. Use the control panel to manage the studies

8. When you reached the end "Thank You" will appear, click Next to save your data and exit
eeDAP Results

1. From "sample_inputfiles" folder click on "Output_Files"

2. Output file name is formated by, "Study Model, User ID, Time, & Input File Name .dapso"

3. Output tissue images folder name is formated same as the output file

4. Output task results are formated by, "Task Name, Task ID, Task Order, Slot (Where the glass was placed)"

Run Software

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