Index

A

Annotation_Generator (class in assessment.annotation) AnnotationExtractor (class in WSI.annotation) assessment.annotation module

assessment.uncertainty module auc_keras_() (assessment.uncertainty.Uncertainty_Analysis method)

B

bootstrapping() (assessment.uncertainty.Uncertainty_Analysis method)

C

calc_pvalue() (assessment.uncertainty.Uncertainty_Analysis method) ci_() (assessment.uncertainty.Uncertainty_Analysis method) compute_ground_truth_statistics() (assessment.uncertainty.Uncertainty_Analysis method)

compute_midrank() (assessment.uncertainty.Uncertainty_Analysis method) compute_midrank_weight() (assessment.uncertainty.Uncertainty_Analysis method) create_xml() (assessment.annotation.Annotation_Generator method)

D

Delong_CI() (assessment.uncertainty.Uncertainty_Analysis method)

delong_roc_variance() (assessment.uncertainty.Uncertainty_Analysis method)

E

extract_ann() (WSI.annotation.AnnotationExtractor method)

extract_bounds() (WSI.readwsi.WSIReader method) extract_region() (WSI.readwsi.WSIReader method)

F

fastDeLong() (assessment.uncertainty.Uncertainty_Analysis method) fastDeLong_no_weights() (assessment.uncertainty.Uncertainty_Analysis method)

fastDeLong_weights() (assessment.uncertainty.Uncertainty_Analysis method) find_between() (WSI.patch.PatchExtractor method)

G

gen_patch() (WSI.patch.PatchExtractor method)

generate_map_file() (assessment.annotation.Annotation_Generator method) get_report() (assessment.uncertainty.Uncertainty_Analysis method)

M

make_folder() (WSI.annotation.AnnotationExtractor method) make_region() (assessment.annotation.Annotation_Generator method) module assessment.annotation assessment.uncertainty WSI.annotation WSI.patch WSI.readwsi

P

patch_extraction() (WSI.patch.WSIpatch_extractor method) patch_extraction_of_tissue() (WSI.patch.WSIpatch_extractor method)

patch_extraction_with_normalized_tiles() (WSI.patch.WSIpatch_extractor method) PatchExtractor (class in WSI.patch)

U

Uncertainty_Analysis (class in assessment.uncertainty)

W

WSI.annotation module WSI.patch module WSI.readwsi module

wsi_reader() (WSI.readwsi.WSIReader method) wsi_xml_list() (WSI.readwsi.WSIReader method) WSIpatch_extractor (class in WSI.patch) WSIReader (class in WSI.readwsi)