The VICTRE pipeline
===================

The code included in this repository will allow you to compile and
execute the full VICTRE pipeline including:

1. Breast phantom generation
   (`source <https://github.com/DIDSR/breastPhantom>`__,
   `documentation <https://breastphantom.readthedocs.io/en/latest/>`__)
2. Breast phantom compression
   (`source <https://github.com/DIDSR/breastCompress>`__,
   `documentation <https://breastcompress.readthedocs.io/en/latest/>`__)
3. Breast phantom cropping
4. Mass generation (`source <https://github.com/DIDSR/breastMass>`__,
   `documentation <https://breastmass.readthedocs.io/en/latest/>`__)
5. Lesion insertion
6. MCGPU projection (`source and
   documentation <https://github.com/DIDSR/VICTRE_MCGPU>`__)
7. DBT reconstruction
   (`source <https://github.com/DIDSR/VICTRE/tree/master/FBP%20DBT%20reconstruction%20in%20C>`__,
   `documentation <https://github.com/DIDSR/VICTRE/blob/master/FBP%20DBT%20reconstruction%20in%20C/README_recon.md>`__)
8. Lesion-absent and lesion-present ROI extraction